Molecular epidemiology of SARS-CoV-2: a review of current data on genetic variability of the virus.

Severe acute respiratory syndrome coronavirus 2 (SARS­CoV­2), associated with coronavirus disease 2019 (COVID­19), is a novel pathogen recently introduced to the human population. It is characterized by rapid epidemic transmissions due to lack of herd immunity as well as by notable mortality which increases with age and in patients with comorbidities. Outbreak forecasting and modelling suggest that the number of infected people will continue to rise globally in the forthcoming months. Upon investigation of the disease patterns, differences in mortality between south­European and north­European countries became striking with mortality of more than 10% in Italy and Spain and less than 5% in Germany and Poland so far. It is unknown if this difference is associated with a higher virulence of viral strains, differences in host genomics, access to medical resources, or other unknown variables. Little is also known about SARS­CoV­2 evolutionary and transmission patterns as a limited number of large­scale sequence and phylogenetic analyses have been performed so far. In this review, we aimed to provide concise data on the SARS­CoV­2 genomics, molecular evolution, and variability with special consideration of the disease course.

SARS-CoV-2 Entry Receptor ACE2 Is Expressed on Very Small CD45- Precursors of Hematopoietic and Endothelial Cells and in Response to Virus Spike Protein Activates the Nlrp3 Inflammasome.

Angiotensin-converting enzyme 2 (ACE2) plays an important role as a member of the renin-angiotensin-aldosterone system (RAAS) in regulating the conversion of angiotensin II (Ang II) into angiotensin (1-7) (Ang [1-7]). But at the same time, while expressed on the surface of human cells, ACE2 is the entry receptor for SARS-CoV-2. Expression of this receptor has been described in several types of cells, including hematopoietic stem cells (HSCs) and endothelial progenitor cells (EPCs), which raises a concern that the virus may infect and damage the stem cell compartment. We demonstrate for the first time that ACE2 and the entry-facilitating transmembrane protease TMPRSS2 are expressed on very small CD133+CD34+Lin-CD45- cells in human umbilical cord blood (UCB), which can be specified into functional HSCs and EPCs. The existence of these cells known as very small embryonic-like stem cells (VSELs) has been confirmed by several laboratories, and some of them may correspond to putative postnatal hemangioblasts. Moreover, we demonstrate for the first time that, in human VSELs and HSCs, the interaction of the ACE2 receptor with the SARS-CoV-2 spike protein activates the Nlrp3 inflammasome, which if hyperactivated may lead to cell death by pyroptosis. Based on this finding, there is a possibility that human VSELs residing in adult tissues could be damaged by SARS-CoV-2, with remote effects on tissue/organ regeneration. We also report that ACE2 is expressed on the surface of murine bone marrow-derived VSELs and HSCs, although it is known that murine cells are not infected by SARS-CoV-2. Finally, human and murine VSELs express several RAAS genes, which sheds new light on the role of these genes in the specification of early-development stem cells. Graphical Abstract •Human VSELs and HSCs express ACE2 receptor for SARS-CoV2 entry. •Interaction of viral spike protein with ACE2 receptor may hyperactivate Nlrp3 inflammasome which induces cell death by pyroptosis. •SARS-CoV2 may also enter cells and eliminate them by cell lysis. •What is not shown since these cells express also Ang II receptor they may hyperactivate Nlrp3 inflammasome in response to Ang II which may induce pyroptosis. Our data indicates that Ang 1-7 may have a protective effect.